Useful Molecular Biology Sites

Gene Database/Genome sites Microbial Resource sites Molecular Biology Resources and Databases General Resource

Molecular Biology Analysis Tools

 Data manipulation and calculation
  • Manipulate DNA sequence
  • DNA to protein
  • VGC for data manipulation, protein (pI, translate etc.) & oligo analysis
  • Calculations - of ssDNA/RNA/protein Tm, extinction coefficient and molecular weight. Also in MBCF
  • transeq at EBI - translate DNA sequence to protein. Also have loads of analysis tools
  • Molbio.net
  • protein pI/MW pI prediction and MW calculation, more at Protparam (extinction coeff. etc.). For other protein analysis sites, click here.
  • Others - Just Bio

    • MolBio Software

  • CloneIt , pDRAW32, POMWIN, MeltCalc, BioEdit
  • Sequence analysis software - EMBOSS, DNATools, GeneDoc, Generunner
  • Sequencing data viewer - ABIViewer, ProSeq, Chromas (free version)
  • Lots more free software at the excellent Genamics SoftwareSeek, see also Molbio software archives, Molecular biology notebook online, Art's Biotech Resource, bioinformatik.de, research tools, Biotechnology software, and MBS.

    • DNA/RNA Analysis tools

  • Restriction enzyme analysis at Webcutter2 and WWWtacg
  • Codon table, Codon Usage Analysis (E.coli & Yeast), and at Codon Usage Database - database for many species.
  • mfold mRNA fold

    • Sequence analysis

  • READSEQ Convert sequence format
  • BLAST
  • Sequence analysis and Gene feature searches at BCM
  • GeneStream Sequence search programs and analysis tools
  • Webgene
  • RepeatMaster at UWGC
  • SAM muliple alignment
  • Biocomputing Service Group
  • CuratoolsSequence Analysis.
  • GeneMachine at NHGRI
  • ORF finder
  • Signal Scan Signal sequence analysis , also at CBS
  • Promoter Scan and other analysis programs at BIMAS, Promoter prediction at BDGP
  • Transcription factor binding site prediction, also at Transfac
  • Splice site prediction
  • GeneMark, Genie aat BDGP, Genscan
  • List of gene analysis programs

    Misc

  • Nee-How Biology resources and on-line software tools
  • LabOnWeb
  • Links for molbio tools at Fan lab
  • E-cell Simulation environment for biochemical and genetic processes
  • Image analysis/densitometry software - Image/J, NiH-Image, and TN-Image for Unix.

    • Useful lab stuff

  • MSDS (material safety data sheets)
  • Lab Survival Manual how to stay safe in the lab
  • biowire Reviews of Molbio products
  • SelectScience
  • Biocompare
  • LabConsumer at The Scientist
  • Agarose info
  • detergent
  • Media recipe at DSMZ
  • Stock solution
  • Reagents & recipes
  • Making buffer at EMBL
  • Measurement converter
  • Lab resources
  • Centrifugation, centrifuge helper and Nomograph
  • Labware
  • LabX buy and sell lab equipments

    • Commercial Sites

  • ATCG Labware & lifescience products search
  • Ambion
  • Anachem
  • Bio-Rad
  • Boehringer-Mannheim
  • Calbiochem/ CN Bioscience
  • Cambridge bioscience
  • Clontech
  • Hybaid
  • Invitrogen
  • Life Technologies (GIBCO/BRL)
  • MBI Fermentas
  • Melford Laboratories
  • MWG-Biotech
  • New England BioLabs
  • Novagen
  • Perkin Elmer
  • Pharmacia
  • Pierce
  • Promega
  • Qiagen and Technical literature
  • Sigma/Aldrich/Fluka
  • Stratagene
  • BDH
  • Fisher Scientific
  • Jencons
  • Millipore
  • New Brunswick Scientific
  • Philip Harris Scientific
  • Whatman
  • Cambridge Isotope Laboratory
  • Isotec

    • Miscellaneous

  • BEST Biochemistry Easy Search Tool
  • NIBSC National Institute for Biological Standard and Control
  • IMB Image Library of Biological Macromolecules
  • Linscott's Directory
  • Pharmacology Online Drug search
  • Dictionary of Cell Biology
  • Molecular Biology Techniques Forum
  • SAB online
  • Antibody Resource custom antibody suppliers etc.
  • Metabolic pathways
  • Biochemical Pathways with wall chart
  • Dynafit Analysis of kinetics and equilibria
  • Tutorials in Molecular biology and Immunology (EISA, western blot, etc)
  • Links for chemist
  • MGuide MicroArray
  • RNA polymerase sites - Darst's lab, Kornberg's group , T7 RNA polymerase, RNA polymerase II.
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    Last modified: Sat 22 Jan 2000